Setup | Introduction | Estimating the Serial Interval | Simulated Data Example | Advanced Features: Convergence Diagnostics and Multiple Restarts | Convergence Diagnostics | Multiple Restarts for Robust Estimation | Real Data Example: Scabies Outbreaks | Estimating Time-Varying Reproduction Number (Rt) | Method details | Understanding the 'shift' Parameter | Real Data Example | Zika outbreak in Giradot, Colombia (2015) | References